Package: transreg 1.0.7

transreg: Penalised Regression with Multiple Sets of Prior Effects ('Transfer Learning')

Improves the predictive performance of ridge and lasso regression exploiting one or more sources of prior information on the importance and direction of effects (Rauschenberger and others 2023, <doi:10.1093/bioinformatics/btad680>). For running the vignette (optional), install 'fwelnet' and 'ecpc' from <https://github.com/kjytay/fwelnet> and <https://github.com/Mirrelijn/ecpc>, respectively.

Authors:Armin Rauschenberger [aut, cre]

transreg_1.0.7.tar.gz
transreg_1.0.7.zip(r-4.7-any)transreg_1.0.7.zip(r-4.6-any)transreg_1.0.7.zip(r-4.5-any)
transreg_1.0.7.tgz(r-4.6-any)transreg_1.0.7.tgz(r-4.5-any)
transreg_1.0.7.tar.gz(r-4.7-any)transreg_1.0.7.tar.gz(r-4.6-any)
transreg_1.0.7.tgz(r-4.6-emscripten)
manual.pdf |manual.html✨
DESCRIPTION |NEWS
card.svg |card.png
transreg/json (API)

# Install 'transreg' in R:
install.packages('transreg', repos = c('https://rauschenberger.r-universe.dev', 'https://cloud.r-project.org'))

Bug tracker:https://github.com/rauschenberger/transreg/issues

Pkgdown/docs site:https://rauschenberger.github.io

On CRAN:

Conda:

4.30 score 373 downloads 1 exports 14 dependencies

Last updated from:3386a29518. Checks:9 OK. Indexed: yes.

TargetResultTimeFilesSyslog
linux-develOK213
source / vignettesOK289
linux-releaseOK215
macos-releaseOK129
macos-oldrelOK104
windows-develOK186
windows-releaseOK145
windows-oldrelOK136
wasm-releaseOK154

Exports:transreg

Dependencies:codetoolscornetforeachglmnetiteratorsjoinetlatticeMatrixpalassoRcppRcppEigenshapestarnetsurvival

Penalised regression with prior effects
Penalised regression with multiple sources of prior effects | Abstract | Full text (open access)
Rendered fromarticle.Rmdusingknitr::rmarkdown

Last update: 2024-09-27
Started: 2024-09-24

Analysis
Initialisation | Methods | Simulations | External applications | Internal application | Further research | Acknowledgements | Session information
Rendered fromanalysis.Rmdusingknitr::knitr

Last update: 2023-11-05
Started: 2022-11-11

Readme and manuals

Help Manual

Help pageTopics
Penalised regression with multiple sets of prior effectstransreg-package
Calculate residuals.residuals
Sign discovery.signdisc
Internal functions.exp.multiple .iso.fast.single .iso.multiple .iso.slow.single calibrate
Extract Coefficientscoef.transreg
Cross-validation (reproducibility)compare
Internal functions.coef.sim .coef.sta .predict.sim .predict.sta .weights.sim .weights.sta .which.stack extract
Fitted valuesfitted.transreg
Plot transreg-objectplot.transreg
Make Predictionspredict.transreg
Print transreg-objectprint.transreg
Simulation (reproducibility)simulate
Penalised regression with multiple sets of prior effectstransreg
Extract Weightsweights.transreg